PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011094057.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 1118aa    MW: 123480 Da    PI: 6.3885
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011094057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +++
  XP_011094057.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDE 224
                     99*****************************96555444..8************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     +++l+++++r+
  XP_011094057.1 225 KQQLLLGIRRA 235
                     8889****997 PP

2Auxin_resp119.13.5e-39260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  XP_011094057.1 260 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 343
                     79******************************998669********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-43124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-41126249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-19133225No hitNo description
PfamPF023622.0E-20134235IPR003340B3 DNA binding domain
SMARTSM010197.2E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942134236IPR003340B3 DNA binding domain
PfamPF065071.6E-34260343IPR010525Auxin response factor
PROSITE profilePS5174528.03910061090IPR000270PB1 domain
PfamPF023091.2E-610061091IPR033389AUX/IAA domain
SuperFamilySSF542771.05E-610231084No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MKTPTTGVGT QPANASATAA EVEKKSINSE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDIDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLSIKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFTMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPPFFR SKRPRQPGMP DDDSSDLDNL FRRTMPWLGD DFGLKDPQAL  420
AGLSLVQWMN MQPNPSLANQ MQPNYMSSLS SSVLQNLAGT DISRQLCLPG TQLPQQNNLQ  480
FNAQRPTQPV QQLDQLQKLP SSSLNPLGSI IQPQQQLTDI SQPPRQNLVS QTLQTGQVPP  540
QVLQSQTPVQ AQNFLQQQQS LLNHQLQRNL AQNLPQQQQQ QQQQQILSHP QQQNLIPSQP  600
SDIINQQLHV SENQIQLQLL QKLHQQQQSL LAQQSAMQQP TQLTQLQDHQ KQLLDVQPNF  660
SRSMSTNQML ETSQGTSSML PQSHVLAQQM TRNNSQTNLR FAQPPQQPKL QQQQQQSGIL  720
PELPGHMGPT LNPINNQPSV GGSSLLTGAA GGGQSAVTDD VPSCSTSPST NNSPNAVQSI  780
MNSRNHRAAL VGDEIAQSSA TLLNPNGLET LSSSGNLIKD LQPKADVKPL LNVPKDQNQG  840
FFASQTYLNA TGTQVDYLDS SSSATSVLSQ NDVQIPPNNN SMSFNSQSML FRDASQDGEV  900
QGDPRGNVAF GANIDNQLGM PMMPEPLMTK DMVGSGKDFT NNLSSGGGML SSYENPKEAQ  960
PELSSSMVSQ SFGVPDMTFN SIDSTINDGS FMNRGAWAPP QMPRMRTYTK VYKRGAVGRS  1020
IDIARYSGYD ELKQDLARRF GIEGQLEDRQ RIGWKLVYVD HENDVLLVGD DPWEEFVTCV  1080
RCIKILSPQE VQQMSLDGDF GNSVLPNQAC SSSDNGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1722336447388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094057.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A068UXX80.0A0A068UXX8_COFCA; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19